Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3624400_3626206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3624400 - 3626206

Intron Length:

1807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGCGTAGA

5'SS Class:

major

3'SS Sequence:

GTTCTCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

AAGCTCTTACCT

Flanking Amino Acid:

DEQKKQDILKKFMEQHPEMD

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

38.9

Major BPS

69.2

0.48

37.1

Major PPT

79.1

0.65

0.8

73.3

31.6

Minor 5ss

30.3

-2.3

2.8

32.8

Minor BPS

55.6

0.25

1.6

68.63

42.1

Associated Gene:

Gene:

NUDC

Ensembl Gene ID:

ENSAPLG00000010698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011174

3624348 - 3632989

8642