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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3627553_3627998_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3627553 - 3627998
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTGGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGCTCCTCACAT
Flanking Amino Acid:
RWTQTLSELDLAIPFKVSFR
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
69.3
0.43
1.1
61.1
44.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
49.8
0.07
2
70.38
45.9

Associated Gene:

Gene:
NUDC
Ensembl Gene ID:
ENSAPLG00000010698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011174
3624348 - 3632989
8642