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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3628113_3628457_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3628113 - 3628457
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGGTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTTTCTTTACAC
Flanking Amino Acid:
EGESSDSNKQETDEEEEDEK
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
68.7
0.42
1
66.3
44.6
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
60.4
0.31
1.7
70.99
40.7

Associated Gene:

Gene:
NUDC
Ensembl Gene ID:
ENSAPLG00000010698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011174
3624348 - 3632989
8642