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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3629197_3631609_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3629197 - 3631609
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCCTTAAAC
Flanking Amino Acid:
TGGEDGVAEKLITDTFNHHN
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
87.4
1.15
1.1
92.09
26.1

Associated Gene:

Gene:
NUDC
Ensembl Gene ID:
ENSAPLG00000010698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011174
3624348 - 3632989
8642