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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3631688_3632893_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3631688 - 3632893
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGCCG
5'SS Class:
major
3'SS Sequence:
CCCCATTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTCCCCATTT
Flanking Amino Acid:
AQQHQGGVRELVNTFFSFLR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
48.8
47.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.4
0.5
0.8
63.7
36.5
Minor 5ss
35.2
-1.7
3.5
47.9
47.8
Minor BPS
48.1
-0
2.1
72.84
44.3

Associated Gene:

Gene:
NUDC
Ensembl Gene ID:
ENSAPLG00000010698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011174
3624348 - 3632989
8642