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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3635326_3635781_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3635326 - 3635781
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATG
Flanking Amino Acid:
YLKGAILFNPDVPGLRASLY
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.8
0.74
0.9
80.7
31.3
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
52.3
-0
1.8
59.73
42.8

Associated Gene:

Gene:
NR0B2
Ensembl Gene ID:
ENSAPLG00000010744
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011176
3634803 - 3636062
1260