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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3639323_3639655_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3639323 - 3639655
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAAAAATAATT
Flanking Amino Acid:
VRRVRLGPGTAAEASPSGAD
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
42.5
-0.4
1.9
57.37
38

Associated Gene:

Gene:
GPATCH3
Ensembl Gene ID:
ENSAPLG00000010745
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011188
3638815 - 3643770
4956