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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3641572_3641948_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3641572 - 3641948
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
CTTTCCTTTTTT
Flanking Amino Acid:
DAQYWQEKNGDFDEQTADDW
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
67.8
43.5
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
86.2
0.81
0.9
85
29.8
Minor 5ss
38.4
-1.3
3.7
55
49.2
Minor BPS
45.8
-0.2
3.6
79.54
43

Associated Gene:

Gene:
GPATCH3
Ensembl Gene ID:
ENSAPLG00000010745
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011188
3638815 - 3643770
4956