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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3642009_3642283_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3642009 - 3642283
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGAG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCTGCTCTGACT
Flanking Amino Acid:
DVDMSVYYDKDGGDKDARDS
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.2
64.9
41.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.2
0.63
0.7
77.3
24.7
Minor 5ss
43.7
-0.7
3
57.3
47.4
Minor BPS
49.9
0.07
1.8
68.22
43

Associated Gene:

Gene:
GPATCH3
Ensembl Gene ID:
ENSAPLG00000010745
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011188
3638815 - 3643770
4956