About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3642649_3643105_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3642649 - 3643105
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTGGACCTAACA
Flanking Amino Acid:
GQNPRCKRGLGYHGEKLPTF
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
77.9
0.63
0.8
70
36.6
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
52.5
0.07
2
69.09
43

Associated Gene:

Gene:
GPATCH3
Ensembl Gene ID:
ENSAPLG00000010745
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011188
3638815 - 3643770
4956