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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3666334_3667369_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3666334 - 3667369
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TCCCTTTGCACC
Flanking Amino Acid:
CAVLCGPFHPSLIDRRGFIQ
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
44.1
-0.4
1.8
51.33
40.2

Associated Gene:

Gene:
ZDHHC18
Ensembl Gene ID:
ENSAPLG00000010792
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011231
3663697 - 3677098
13402
ENSAPLT00000037045
3662191 - 3677098
14908
ENSAPLT00000029162
3650771 - 3677098
26328