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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3667480_3668390_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3667480 - 3668390
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
CCTACCTTAATC
Flanking Amino Acid:
TGLRADSKGRIKGSWSNKRG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
70.8
0.63
1.3
70.67
41.2

Associated Gene:

Gene:
ZDHHC18
Ensembl Gene ID:
ENSAPLG00000010792
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011231
3663697 - 3677098
13402