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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3669483_3669967_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3669483 - 3669967
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CTGATGGGACCT
Flanking Amino Acid:
FACVVTHLTLRSQRDGFLTT
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
76.2
39.9
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
85
0.79
0.7
80.5
24.7
Minor 5ss
41.2
-1
2.8
50.4
39.3
Minor BPS
31.9
-1.3
2.4
48.08
45

Associated Gene:

Gene:
ZDHHC18
Ensembl Gene ID:
ENSAPLG00000010792
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037045
3662191 - 3677098
14908
ENSAPLT00000029162
3650771 - 3677098
26328
ENSAPLT00000011231
3663697 - 3677098
13402