About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3674275_3676622_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3674275 - 3676622
Intron Length:
2348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACG
Flanking Amino Acid:
LATSGLFFAFDCPFLASHLT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
59.5
39.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
90.7
0.92
0.6
87.6
22.6
Minor 5ss
31.3
-2.1
2.8
33.6
34.8
Minor BPS
69.4
0.47
1.3
67.24
40.9

Associated Gene:

Gene:
ZDHHC18
Ensembl Gene ID:
ENSAPLG00000010792
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029162
3650771 - 3677098
26328
ENSAPLT00000011231
3663697 - 3677098
13402
ENSAPLT00000037045
3662191 - 3677098
14908