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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3690116_3690961_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3690116 - 3690961

Intron Length:

846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCCTTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTCT

U12 Branch Point Sequence:

CCTTCCTTCCTT

Flanking Amino Acid:

NSIMTFNLSQLPGLLELLVE

Intron Amino Acid Position:

1320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.1

34.7

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

78.3

0.64

0.7

73.2

Minor 5ss

26.1

-2.7

3.2

42.6

Minor BPS

42.8

-0.4

3.6

70.75

46.9

Associated Gene:

Gene:

ARID1A

Ensembl Gene ID:

ENSAPLG00000010807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035050

3687157 - 3724264

37108

ENSAPLT00000011284

3687157 - 3724276

37120