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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3694304_3694481_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3694304 - 3694481

Intron Length:

178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCAATCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

CTTCTTTCAATC

Flanking Amino Acid:

NKDPYSSMRKAPGSDPFMSS

Intron Amino Acid Position:

858

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.6

0.69

0.9

77.2

36.6

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

53.7

0.1

1.5

63.08

37.1

Associated Gene:

Gene:

ARID1A

Ensembl Gene ID:

ENSAPLG00000010807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035050

3687157 - 3724264

37108

ENSAPLT00000011284

3687157 - 3724276

37120