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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_369653_370315_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
369653 - 370315
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
CAATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTCATATAACT
Flanking Amino Acid:
TKGPDEAKIKALLERTGYTL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83
0.74
0.8
80.7
36.3
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
53.5
0.19
1.8
75.43
41

Associated Gene:

Gene:
HNRNPR
Ensembl Gene ID:
ENSAPLG00000003755
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003871
353900 - 382318
28419