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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3702495_3703745_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3702495 - 3703745
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
TTTGGAGTAAAC
Flanking Amino Acid:
MHAAANSIQNRPPGYPNMNQ
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
80.3
0.68
0.8
73.3
37.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
40.9
-0.7
2.5
60.42
44.6

Associated Gene:

Gene:
ARID1A
Ensembl Gene ID:
ENSAPLG00000010807
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035050
3687157 - 3724264
37108
ENSAPLT00000011284
3687157 - 3724276
37120