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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3704062_3704684_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3704062 - 3704684
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTCATCT
Flanking Amino Acid:
GPQGGQYGPQGGYPRQPNYN
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
100
1.24
0.5
100
0
Major PPT
75
0.56
0.8
73.7
31.2
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
48.8
-0
1.8
66.8
44.7

Associated Gene:

Gene:
ARID1A
Ensembl Gene ID:
ENSAPLG00000010807
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035050
3687157 - 3724264
37108
ENSAPLT00000011284
3687157 - 3724276
37120