Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3705678_3706040_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3705678 - 3706040

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGCTC

5'SS Class:

major

3'SS Sequence:

TTTTGTGGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGTGATTAACC

Flanking Amino Acid:

SGPLSPAAVPGNQMPPRPPS

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

67.8

43.5

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

73.5

0.53

69.5

41.6

Minor 5ss

40.9

-1

3.4

59.1

45.6

Minor BPS

60.9

0.32

2.1

75.47

Associated Gene:

Gene:

ARID1A

Ensembl Gene ID:

ENSAPLG00000010807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035050

3687157 - 3724264

37108

ENSAPLT00000011284

3687157 - 3724276

37120