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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_370983_373218_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
370983 - 373218
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
CTTTAACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTAACT
Flanking Amino Acid:
AERLDEIFQTGLVAYVDLDE
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.7
0.62
0.8
74.7
34.9
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
88.9
1.3
0.8
96.91
27.6

Associated Gene:

Gene:
HNRNPR
Ensembl Gene ID:
ENSAPLG00000003755
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003871
353900 - 382318
28419