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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3723346_3724063_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3723346 - 3724063

Intron Length:

718

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGCAC

5'SS Class:

major

3'SS Sequence:

TCTTCTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

TGCTTCTTAACC

Flanking Amino Acid:

TMSSISYAQQIPPYGQQGPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.1

57.3

Major BPS

82.2

0.8

71.9

35.8

Major PPT

0.88

0.6

84.5

23.3

Minor 5ss

-2.4

3.6

40.5

Minor BPS

78.3

0.87

1.1

78.59

Associated Gene:

Gene:

ARID1A

Ensembl Gene ID:

ENSAPLG00000010807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035050

3687157 - 3724264

37108

ENSAPLT00000011284

3687157 - 3724276

37120