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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3758211_3758543_R

Intron Information:

Intron Rank:
129152
Intron Class:
major
Intron Phase:
Intron Coordinates:
3758211 - 3758543
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGGG
5'SS Class:
major
3'SS Sequence:
TTGCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.4
58.8
42.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.6
0.85
0.8
80.5
37
Minor 5ss
26.1
-2.7
3.1
31.9
42.5
Minor BPS
56.7
0.19
1.7
69.43
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016683
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043546
3757898 - 3762762
4865