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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3758658_3758865_R

Intron Information:

Intron Rank:
129153
Intron Class:
major
Intron Phase:
Intron Coordinates:
3758658 - 3758865
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCGG
5'SS Class:
major
3'SS Sequence:
TAAACTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTCCCTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
56.9
47.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76
0.58
1
68.9
41.3
Minor 5ss
36.6
-1.5
3.1
47.7
47.8
Minor BPS
58.8
0.27
1.9
74.63
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016683
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043546
3757898 - 3762762
4865