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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3788624_3789054_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3788624 - 3789054
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCACGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ACGATGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTCTTCTAAAGT
Flanking Amino Acid:
NWDTISDLSKDLVSKMLHVD
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
76.9
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
60.5
0.24
1
55.5
40.6
Minor 5ss
31.3
-2.1
4.5
55.1
49.1
Minor BPS
52.8
0.17
2
71.56
45.6

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605