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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3792121_3792424_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3792121 - 3792424
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
AATCCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTCTTTCAAAT
Flanking Amino Acid:
DTEFTSRTPKDSPGIPPSAG
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73
0.52
1
65.8
40
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
58.5
0.35
1.6
78.7
37.2

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989