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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3792528_3793551_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3792528 - 3793551
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTGCCTTTACT
Flanking Amino Acid:
HPFYSTIDWNKLYRREIKPP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
86.4
0.82
0.8
80.7
30.9
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
69.3
0.69
1.8
84
43

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605