Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3793617_3793835_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3793617 - 3793835

Intron Length:

219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGACAT

5'SS Class:

strong_major

3'SS Sequence:

GTGCCTCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAACAT

U12 Branch Point Sequence:

CCTGATTAAACA

Flanking Amino Acid:

LFKRNPANRLGSGPDGAEEI

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

80.7

33.7

Major BPS

63.2

0.33

1.1

69.6

35.7

Major PPT

77.1

0.61

0.9

73.3

37.1

Minor 5ss

33.6

-1.9

3.2

47.4

Minor BPS

46.3

-0.2

1.9

55.03

44.5

Associated Gene:

Gene:

RPS6KA1

Ensembl Gene ID:

ENSAPLG00000010872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026085

3787458 - 3799202

11745

ENSAPLT00000041633

3788056 - 3827044

38989

ENSAPLT00000019406

3787458 - 3802788

15331

ENSAPLT00000037650

3787458 - 3821062

33605

ENSAPLT00000011391

3788056 - 3827044

38989

ENSAPLT00000032813

3787458 - 3821062

33605

ENSAPLT00000030890

3787458 - 3827044

39587

ENSAPLT00000046574

3787483 - 3806400

18918