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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3793925_3794179_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3793925 - 3794179
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
ACTTCCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GATTGCATAACT
Flanking Amino Acid:
DRKETMTLILKAKLGMPQFL
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
36.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
75.2
0.57
0.8
66.7
34.9
Minor 5ss
31.5
-2.1
3.4
38.5
40.9
Minor BPS
58.4
0.34
2.1
79.37
42

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605