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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3795117_3795715_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3795117 - 3795715
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
ATCTACACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
GIIYRDLKPENILLDEEGHI
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.1
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
71.3
0.48
0.9
63.6
37.1
Minor 5ss
36.9
-1.5
3.5
48.7
41.9
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989