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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3796527_3797330_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3796527 - 3797330

Intron Length:

804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GCTTGTGTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

GGGGTCTGATTC

Flanking Amino Acid:

NHPFVVKLHYAFQTEGKLYL

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

74.1

31.6

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

76.5

0.6

72.6

42.4

Minor 5ss

-2.6

31.7

42.6

Minor BPS

42.4

-0.5

1.7

43.93

Associated Gene:

Gene:

RPS6KA1

Ensembl Gene ID:

ENSAPLG00000010872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026085

3787458 - 3799202

11745

ENSAPLT00000041633

3788056 - 3827044

38989

ENSAPLT00000019406

3787458 - 3802788

15331

ENSAPLT00000037650

3787458 - 3821062

33605

ENSAPLT00000011391

3788056 - 3827044

38989

ENSAPLT00000032813

3787458 - 3821062

33605

ENSAPLT00000030890

3787458 - 3827044

39587

ENSAPLT00000046574

3787483 - 3806400

18918