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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3797412_3797717_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3797412 - 3797717
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGTGCCTGAGCT
Flanking Amino Acid:
MKVLKKATLKVRDRVRTKIE
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80.8
0.69
0.7
75.8
26.4
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
53.3
0.18
1.8
72.49
43.8

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918
ENSAPLT00000026085
3787458 - 3799202
11745
ENSAPLT00000041633
3788056 - 3827044
38989
ENSAPLT00000019406
3787458 - 3802788
15331
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000011391
3788056 - 3827044
38989
ENSAPLT00000032813
3787458 - 3821062
33605