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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3799038_3803926_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3799038 - 3803926
Intron Length:
4889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATCAA
U12 Branch Point Sequence:
ATATTCCCAATC
Flanking Amino Acid:
EKDLVDSSDKGEGVVKEINI
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
58.9
0.22
1.1
61.7
34.2
Major PPT
85.2
0.79
0.7
83.1
25.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
49
-0
1.8
62.54
36.6

Associated Gene:

Gene:
RPS6KA1
Ensembl Gene ID:
ENSAPLG00000010872
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041633
3788056 - 3827044
38989
ENSAPLT00000037650
3787458 - 3821062
33605
ENSAPLT00000030890
3787458 - 3827044
39587
ENSAPLT00000046574
3787483 - 3806400
18918