Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3799038_3820534_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3799038 - 3820534

Intron Length:

21497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAATG

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATCAA

U12 Branch Point Sequence:

ATATTCCCAATC

Flanking Amino Acid:

PEESGNPPSKGEGVVKEINI

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

77.9

36.7

Major BPS

58.9

0.22

1.1

61.7

34.2

Major PPT

85.2

0.79

0.7

83.1

25.2

Minor 5ss

36.4

-1.5

3.1

48.5

47.2

Minor BPS

-0

1.8

62.54

36.6

Associated Gene:

Gene:

RPS6KA1

Ensembl Gene ID:

ENSAPLG00000010872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032813

3787458 - 3821062

33605