Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3803981_3806358_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3803981 - 3806358

Intron Length:

2378

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TATTGTTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTTAT

U12 Branch Point Sequence:

TATTGTTCCACA

Flanking Amino Acid:

LFRSKPRIQEAKSDITWIEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.6

1.17

0.7

96.8

6.8

Major BPS

0.47

1.2

61.1

45.5

Major PPT

78.7

0.65

0.9

72.8

37.2

Minor 5ss

26.9

-2.6

4.1

42.9

44.7

Minor BPS

-0.3

2.3

64.37

42.3

Associated Gene:

Gene:

RPS6KA1

Ensembl Gene ID:

ENSAPLG00000010872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046574

3787483 - 3806400

18918