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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3836786_3844904_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3836786 - 3844904
Intron Length:
8119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACAG
5'SS Class:
major
3'SS Sequence:
TGTTTACCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCCTTCTAACA
Flanking Amino Acid:
AENGDAKTDQQVAVPEVGKE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
57.6
41.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.5
0.53
0.8
71.4
34.7
Minor 5ss
36.7
-1.5
3.1
46.9
48.4
Minor BPS
49.7
-0
1.7
60.44
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020546
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023541
3836658 - 3845642
8985