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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3843035_3844259_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3843035 - 3844259
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAGTGGGG
5'SS Class:
major
3'SS Sequence:
CCCTAGAACAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATAGTC
Flanking Amino Acid:
TASLLCFEGGAKPRALMCKC
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.3
51.8
42.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
44.2
-0.3
1.6
41.9
36
Minor 5ss
16.5
-3.9
4
19.6
38
Minor BPS
49.4
-0
1.7
64.94
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020546
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035956
3842994 - 3844960
1967