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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3849800_3851728_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3849800 - 3851728
Intron Length:
1929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCTTTTCACT
Flanking Amino Acid:
RFQMNYSALQKARDSYMEER
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.9
0.65
0.8
71.2
34.4
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
50.7
0.1
1.8
68
43.5

Associated Gene:

Gene:
DHDDS
Ensembl Gene ID:
ENSAPLG00000008871
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009250
3848187 - 3857270
9084