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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3855694_3856151_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3855694 - 3856151
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGG
5'SS Class:
major
3'SS Sequence:
TGTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTGTTTTTAATT
Flanking Amino Acid:
HSQGFDKLAQTLRWCLNLGI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83
0.74
0.8
77
31.6
Minor 5ss
26
-2.8
3
30.8
42.8
Minor BPS
72.2
0.78
1.1
79.65
37.1

Associated Gene:

Gene:
DHDDS
Ensembl Gene ID:
ENSAPLG00000008871
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009250
3848187 - 3857270
9084