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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3856269_3857191_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3856269 - 3857191
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAG
U12 Branch Point Sequence:
TTGTCCTTGTTT
Flanking Amino Acid:
IERFCANIIKAGPMPKHVAF
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
52.1
0.05
1.6
63.1
44.4
Major PPT
80.2
0.68
0.8
72.6
37.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
49
0
3.5
82.57
39.6

Associated Gene:

Gene:
DHDDS
Ensembl Gene ID:
ENSAPLG00000008871
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009250
3848187 - 3857270
9084