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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3888566_3888653_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3888566 - 3888653
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
CTCCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCCTCACCG
Flanking Amino Acid:
AICSLHPIRLGCPVVERPGE
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.6
37.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
84.1
0.77
0.7
76
32.5
Minor 5ss
33.7
-1.9
3.4
44.7
44.3
Minor BPS
51.7
-0
2
59.08
48.4

Associated Gene:

Gene:
CRYBG2
Ensembl Gene ID:
ENSAPLG00000008864
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009214
3884776 - 3892149
7374