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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3889698_3889792_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3889698 - 3889792
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGAGAC
U12 Branch Point Sequence:
AGACCCCGACCA
Flanking Amino Acid:
RIASAQPILQVGERNLHFVS
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
44.6
-0.3
1.3
38.1
41.7
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
42.3
-0.5
1.9
51.38
39

Associated Gene:

Gene:
CRYBG2
Ensembl Gene ID:
ENSAPLG00000008864
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009214
3884776 - 3892149
7374