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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3889826_3889915_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3889826 - 3889915
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
CCCCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
GCCCCCGTCACC
Flanking Amino Acid:
GERNLHFVSKILLFSEPDFL
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
50
0
1.2
54.6
40.8
Major PPT
69.6
0.44
0.8
60.5
29.4
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
43.8
-0.5
2.3
52.09
45.2

Associated Gene:

Gene:
CRYBG2
Ensembl Gene ID:
ENSAPLG00000008864
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009214
3884776 - 3892149
7374