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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3891983_3892060_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3891983 - 3892060
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
CTCCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCCTCCCCAACC
Flanking Amino Acid:
MFEDMILDVKGGRSYDRDHA
Intron Amino Acid Position:
1348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
77.4
0.62
0.7
72.3
25.8
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
49
-0
2
59.17
45.8

Associated Gene:

Gene:
CRYBG2
Ensembl Gene ID:
ENSAPLG00000008864
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009214
3884776 - 3892149
7374