Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3897605_3898381_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3897605 - 3898381

Intron Length:

777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATCC

5'SS Class:

strong_major

3'SS Sequence:

TCTGGTCCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

AGGAGCTTAACA

Flanking Amino Acid:

DKQAREIQLKDRRIAELEEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

71.9

32.2

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

65.1

0.34

1.1

64.3

Minor 5ss

38.6

-1.3

3.1

51.6

45.1

Minor BPS

55.7

0.17

1.9

63.44

42.5

Associated Gene:

Gene:

UBXN11

Ensembl Gene ID:

ENSAPLG00000008598

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026426

3896968 - 3906957

9990

ENSAPLT00000008939

3896376 - 3906957

10582