Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3900163_3901563_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3900163 - 3901563

Intron Length:

1401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

CCTTCTGTAACT

Flanking Amino Acid:

ELPAKSLWKPGEAVVSKHEI

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

39.3

Major BPS

62.2

0.3

1.2

38.7

Major PPT

73.8

0.54

0.8

67.7

32.4

Minor 5ss

31.8

-2.1

3.5

46.7

48.6

Minor BPS

61.6

0.44

2.1

78.9

Associated Gene:

Gene:

UBXN11

Ensembl Gene ID:

ENSAPLG00000008598

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026426

3896968 - 3906957

9990

ENSAPLT00000008939

3896376 - 3906957

10582