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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3909402_3909762_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3909402 - 3909762
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CTTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCGAG
U12 Branch Point Sequence:
TTGCGAGCAACC
Flanking Amino Acid:
QIVNGDHYCGDYELFVEAVE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
43.9
-0.3
1.7
43.9
48.6
Major PPT
75.9
0.58
0.8
69.8
31
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
37.6
-0.9
2.5
53.21
44.1

Associated Gene:

Gene:
SH3BGRL3
Ensembl Gene ID:
ENSAPLG00000024458
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048318
3909336 - 3910310
975