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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3909931_3910262_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3909931 - 3910262
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CCGGGGTTCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCTTGATAACC
Flanking Amino Acid:
YSTSVTGSREIKSQQSEVTR
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
59.9
0.22
1
48.8
43.9
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
50.2
-0
2.3
70.45
41.2

Associated Gene:

Gene:
SH3BGRL3
Ensembl Gene ID:
ENSAPLG00000024458
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048318
3909336 - 3910310
975