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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3914140_3916301_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3914140 - 3916301
Intron Length:
2162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAATCTA
5'SS Class:
major
3'SS Sequence:
TGTTTCTGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GCTTCTTTAACT
Flanking Amino Acid:
FQVLEQSTGKHFLQCFPDQL
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
65.4
40.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
72.7
0.51
0.9
68.9
37.2
Minor 5ss
39.3
-1.2
3.1
55.2
43
Minor BPS
82.5
1.1
1.1
88.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028695
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041649
3912828 - 3916506
3679