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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3921622_3922195_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3921622 - 3922195
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AATACATAAACT
Flanking Amino Acid:
DLRLQQNSPSAPSPTQKSHF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
53.1
0.18
2
74.08
41.9

Associated Gene:

Gene:
CEP85
Ensembl Gene ID:
ENSAPLG00000008105
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008440
3912714 - 3922566
9853